Microsoft have made available what looks to be an excellent resource for walking through the complete sequencing process:
Application Virtualization Sequencing SuperFlow
The SuperFlow interactive content model provides a structured and interactive interface for viewing documentation. Each SuperFlow includes comprehensive information about a specific dataflow, workflow, or process. Depending on the focus of the SuperFlow, you will find overview information, steps that include detailed information, procedures, sample log entries, best practices, real-world scenarios, troubleshooting information, security information, animations, or other information. Each SuperFlow also includes links to relevant resources, such as Web sites or local files that are copied to your computer when you install the SuperFlow. This SuperFlow provides detailed information about the Application Virtualization Sequencing process.
More SuperFlows can be found here.